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Cafe - Cellular Fate Explorer
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HuangDDU/CellFateExplorer
Cafe - Cellular Fate Explorer
HuangDDU/CellFateExplorer
Index
Installation
Tutorial
Tutorial
Quick Start
(FIX)Benchmark
(TODO)Visualization
(TODO)cellxgene-cafe
API
API
data
data
cafe.data.FateAnnData
cafe.data.MilestoneWrapper
cafe.data.WaypointWrapper
Dataset
method
method
cafe.method.FateMethod
cafe.method.CondaBackend
cafe.method.FunctionBackend
cafe.method.CFEDockerBackend
cafe.method.DynverseDockerBackend
Method List
metric
metric
cafe.metric.calculate_metrics
cafe.metric.metric_pseudotime
cafe.metric.metric_velocity
cafe.metric.metric_embedding
cafe.metric.metric_topology
cafe.metric.metric_cluster
cafe.metric.metric_correlation
cafe.metric.metric_featureimp
plot
plot
cafe.plot.plot_trajectory
cafe.plot.plot_graph
cafe.plot.plot_stream
cafe.plot.plot_wrapper
cafe.plot.plot_pie
Development Document
Development Document
Contributing Guide
Contributing Guide
Method
Data
Metric
Visualization
Document
Shedule
Shedule
Data
Method
Plot
Benchmark
Downstream Analysis
Change Log
Benchmark
metric
topology
cluster
distance correlation
feature IMP
benchmark
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