Downstream Analysis

1. Interactive web platform based cellxgene

1. You can launch cellxgene with trajectory extension tools cxgxf in following code, notebook_dev/cellxgene_cellrank_simulation_new_cxgxf.ipynb:

# TODO: only native cellxgene, cxgxf porjectory deployment is required.
fadata.launch_cellxgene()

1. CXGXF Preview:

2. Function:

3. Trajectory method and embedding selection.
4. Result visualization.
5. Metric benchmark.

2. BEAM analysis

ref: Monocle

3. GRN inference

ref: SCENIC, CellOracle

4. Trajectory alignment

ref: Gene2Gene